Diagnosing Nutrient Deficiencies: A Visual Guide to Healthy vs. Unhealthy Plants
- Secret Gardens
- 10 hours ago
- 6 min read
Every indoor grower has experienced that moment of concern when their plants start showing unusual symptoms. Leaves turning yellow, brown spots appearing, or strange discolouration can send even experienced cultivators into a panic. The good news? Your plants are constantly communicating with you, and learning to read these signals is one of the most valuable skills you can develop.
At Secret Gardens, we believe that understanding what your plants need is just as important as providing quality nutrients. That's why we've created this comprehensive guide to help you identify, diagnose, and correct the most common nutrient deficiencies before they impact your harvest.

Understanding the Basics: Mobile vs. Immobile Nutrients
Before we dive into specific deficiencies, it's crucial to understand how nutrients move within your plants. This knowledge will help you quickly identify where the problem is showing up and what might be causing it.
Mobile Nutrients can be redistributed from older growth to new growth when the plant is deficient. This means deficiency symptoms typically appear on older, lower leaves first. Mobile nutrients include nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), and molybdenum (Mo).
Immobile Nutrients cannot be easily moved within the plant, so deficiency symptoms appear on new growth first. These include calcium (Ca), sulfur (S), iron (Fe), manganese (Mn), boron (B), copper (Cu), and zinc (Zn).
The Major Players: NPK Deficiencies
Nitrogen (N) Deficiency
What to Look For:
Lower leaves turning pale green, then yellow
Yellowing progresses upward through the plant
Slower growth and smaller leaves
Weak, spindly stems
Why It Happens: Nitrogen is essential for vegetative growth and chlorophyll production. It's highly mobile, so plants will pull nitrogen from older leaves to support new growth when supplies run low. This is particularly common during the vegetative stage when plants have high nitrogen demands.
The Fix: Increase your base fertiliser application or supplement with a nitrogen-rich additive. With Secret Gardens' nutrient line, ensure you're following the recommended feeding schedule for your growth stage. Nitrogen deficiencies respond quickly—you should see improvement within 3-5 days.
Phosphorus (P) Deficiency
What to Look For:
Dark green or purplish discolouration on leaves
Purple or red stems
Lower leaves may develop dark spots or a bronzed appearance
Slow growth and delayed flowering
Smaller, denser buds
Why It Happens: Phosphorus is crucial for root development, flowering, and energy transfer within the plant. Deficiencies often occur during the transition to flowering when phosphorus demands spike dramatically. Cold temperatures and incorrect pH can also lock out phosphorus even when it's present.
The Fix: Check your pH first—phosphorus is best absorbed between 6.0-7.0 in soil and 5.5-6.2 in hydro/coco. If pH is correct, increase phosphorus-rich additives during flowering. Products like Secret Gardens' BudBurst are specifically formulated to meet these increased demands.
Potassium (K) Deficiency
What to Look For:
Brown, burnt-looking edges on leaves (tip burn)
Yellow or brown spots between leaf veins
Symptoms start on lower leaves and move upward
Weak stems and branches
Reduced resistance to pests and diseases
Why It Happens: Potassium regulates water uptake, nutrient transport, and helps plants manage stress. It's particularly important during flowering for bud development and terpene production. Overwatering and poor drainage can contribute to potassium deficiencies.
The Fix: Ensure proper pH levels and good drainage. Increase potassium in your feeding schedule, especially during mid to late flowering. Avoid overwatering, which can prevent roots from taking up potassium effectively.
Secondary Nutrients: The Supporting Cast
Calcium (Ca) Deficiency
What to Look For:
New growth appears distorted, crinkled, or curled
Brown, necrotic spots on new leaves
Weak stem structure
Blossom end issues
Why It Happens: Calcium is immobile and essential for cell wall development. Problems often arise in hydroponic systems or when using RO water. High humidity and poor transpiration can also prevent calcium from moving to where it's needed.
The Fix: Ensure adequate calcium in your nutrient solution. Secret Gardens' HerbHealth additive provides essential secondary nutrients including calcium. Improve air circulation to encourage transpiration, which helps move calcium through the plant.
Magnesium (Mg) Deficiency
What to Look For:
Yellowing between leaf veins while veins stay green (interveinal chlorosis)
Symptoms appear on lower, older leaves first
Leaves may curl upward at the edges
Rust-coloured spots in severe cases
Why It Happens: Magnesium is the central molecule in chlorophyll and is crucial for photosynthesis. It's mobile, so plants will steal it from older leaves. This deficiency is common in coco coir grows and when using LED lighting, which can increase magnesium demands.
The Fix: Supplement with a cal-mag product or Epsom salts (1-2 tsp per gallon). Ensure your base fertiliser provides adequate magnesium—Secret Gardens' formulas are designed with proper cal-mag ratios for New Zealand growing conditions.
Micronutrients: Small but Mighty
Iron (Fe) Deficiency
What to Look For:
New growth turns yellow while veins remain green
Severe cases show almost white new leaves
Growth slows significantly
Why It Happens: Iron is immobile and symptoms appear on new growth. This is almost always a pH problem rather than an actual lack of iron. When pH is too high (above 7.0), iron becomes unavailable even though it's present.
The Fix: Check and adjust pH immediately. In soil, aim for 6.0-6.5; in hydro/coco, 5.5-6.0. Iron deficiencies resolve quickly once pH is corrected.
Manganese (Mn) Deficiency
What to Look For:
Similar to iron deficiency but affects mid to lower growth
Interveinal chlorosis with dead spots appearing
Leaf edges may curl upward
The Fix: Again, this is usually pH-related. Manganese is best absorbed at pH 5.0-6.5. Adjust pH and ensure you're using a complete nutrient system that includes trace elements.
The pH Factor: The Root of Many Problems
Here's a crucial truth that every grower needs to understand: nutrient deficiencies are often not about lacking nutrients—they're about the plant's inability to absorb nutrients that are already present. pH is the gatekeeper of nutrient availability.
Optimal pH Ranges:
Soil: 6.0-7.0
Coco Coir: 5.5-6.5
Hydroponics: 5.5-6.2
Different nutrients are absorbed best at different pH levels, which is why many experienced growers let their pH drift slightly within the optimal range rather than locking it at one specific number. This ensures all nutrients have periods of maximum availability.
Prevention is Better Than Cure
The best way to handle nutrient deficiencies is to prevent them from happening in the first place. Here's how:
1. Follow a Proven Feeding Schedule Secret Gardens' feeding schedule is specifically designed to meet plant needs throughout their lifecycle. Don't improvise—especially if you're new to growing.
2. Monitor pH Religiously Invest in a quality pH pen and calibrate it regularly. Check and adjust pH every time you prepare your nutrient solution.
3. Don't Overfeed More nutrients don't equal bigger plants. Overfeeding causes nutrient lockout and burns, which can look similar to deficiencies. Start at recommended doses and increase only if needed.
4. Maintain Proper Environment Temperature, humidity, and airflow all affect nutrient uptake. Keep conditions within optimal ranges for your growth stage.
5. Use Quality Water If using tap water, let it sit for 24 hours to allow chlorine to evaporate. If using RO water, ensure your nutrients include calcium and magnesium.
6. Keep a Grow Journal Document your pH, EC/PPM, feeding schedule, and any issues. Patterns will emerge that help you fine-tune your approach.
Common Lookalikes: Don't Misdiagnose
Some problems masquerade as nutrient deficiencies:
Heat Stress can cause leaf edges to curl up and brown, similar to potassium deficiency. Check your canopy temperature—it should be 24-28°C.
Light Burn appears as bleached, white patches on upper leaves closest to lights. This isn't a nutrient issue—raise your lights or reduce intensity.
Overwatering causes yellowing similar to nitrogen deficiency. Check soil moisture before jumping to conclusions.
Pest Damage from spider mites or thrips can create spots that look like nutrient problems. Always inspect leaves closely with a jeweller's loupe.
When to Take Action
Not every imperfection requires intervention. A few yellow leaves on a large plant near harvest is normal. The plant is naturally pulling nutrients for flower development. However, take action when:
Multiple leaves show symptoms
New growth is affected
Symptoms are progressing rapidly
You're early in the growth cycle
Multiple deficiency symptoms appear simultaneously
The Secret Gardens Advantage
At Secret Gardens, we've formulated our nutrient line specifically for New Zealand growers and our unique conditions. Our base fertilisers for soil, coco, and hydro include all essential macro and micronutrients in the proper ratios. Our targeted additives like BudBurst and HerbHealth are designed to meet increased demands during critical growth stages.
By combining quality nutrients with proper diagnosis skills, you're setting yourself up for the healthy, vigorous plants and exceptional yields you're aiming for.
Final Thoughts
Learning to read your plants takes time and experience. Don't panic at the first sign of discolouration—take a breath, observe carefully, and diagnose methodically. Start with the most common issues (pH, nitrogen, and watering problems account for about 80% of issues), and work from there.
Remember, healthy plants start with healthy roots, proper environment, and balanced nutrition. Master these fundamentals, and you'll spend less time troubleshooting and more time enjoying the process.
Have questions about diagnosing issues in your garden? Our team at Secret Gardens is here to help. Get in touch through our contact page or follow us on Facebook for regular growing tips and updates.
Happy growing!
Need help getting your plants back on track? Check out our full range of premium New Zealand-made fertilisers and additives at secretgardens.kiwi




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